2  Installation

Author

Luis Valente

2.1 Install required software:

2.2 Install required R packages

Open and run this script in Rstudio. This should install all required R packages (may take a while!).

install.packages('DAISIE',dependencies = TRUE)
install.packages('DAISIEprep',dependencies = TRUE)
install.packages('ape',dependencies = TRUE)

If you run into problems with ‘ggtree’ package. Make sure you have the latest version of R, then use:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("ggtree")

Check if packages load correctly

library(DAISIE)
library(ape)
library(DAISIEprep)