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Extract ancestral state probabilities from BioGeoBEARS output

Source: R/write_biogeobears_input.R
extract_biogeobears_ancestral_states_probs.Rd

Extract the probabilities of each endemicity status for tip and internal node states from the output of an optimisation performed with BioGeoBEARS

Usage

extract_biogeobears_ancestral_states_probs(biogeobears_res)

Arguments

biogeobears_res

a list, the output of BioGeoBEARS::bears_optim_run()

Value

a data.frame with one row per node (tips and internals) and four columns: label | not_present | endemic | nonendemic, the last three columns containing the probability of each endemicity status (and summing to 1).