Convert endemicity to SSE states — endemicity_to_sse_states • DAISIEprep

Convert endemicity to SSE states

Usage

endemicity_to_sse_states(endemicity_status, sse_model = "musse")

Arguments

endemicity_status: character vector with values "endemic", "nonendemic" and/or "not_present"
sse_model: either "musse" (default) or "geosse". MuSSE expects state values 1, 2, 3, which here we encode as "not_present", "endemic", "nonendemic", respectively. GeoSSE expects trait values 0, 1, 2, with 0 the widespread state (here, "nonendemic"), and 1 and 2 are "not_present" and "endemic", respectively.

Value

an integer vector of tip states, following the encoding expected by the MuSSE/GeoSSE